40 groupedHyperframe
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Chapter 40 outlines the S3 methods currently not planned for the class 'groupedHyperframe' (Chapter 15).
40.1 Use groupedHyperframe as grouped_ppp() input
Listing 40.1 creates a grouped hyper data frame lung_g2 which retains the \(x\)- and \(y\)-coords,
lung_g2 retaining \(x\)- and \(y\)-coords
lung_g2 = wrobel_lung |>
within.data.frame(expr = {
dapi = NULL
}) |>
aggregate2hyper(by = ~ patient_id/image_id)
lung_g2Grouped Hyper Data Frame: ~patient_id
3 patient_id
image_id patient_id gender age x y hladr
1 [36953,13765].im3 #03 2-080-378 M 84 (numeric) (numeric) (numeric)
2 [39206,15250].im3 #03 2-080-378 M 84 (numeric) (numeric) (numeric)
3 [40242,17359].im3 #03 2-080-378 M 84 (numeric) (numeric) (numeric)
4 [40863,16444].im3 #03 2-080-378 M 84 (numeric) (numeric) (numeric)
5 [40864,18015].im3 #01 0-889-121 F 85 (numeric) (numeric) (numeric)
6 [41191,13764].im3 #03 2-080-378 M 84 (numeric) (numeric) (numeric)
7 [42689,19214].im3 #01 0-889-121 F 85 (numeric) (numeric) (numeric)
8 [42806,16718].im3 #01 0-889-121 F 85 (numeric) (numeric) (numeric)
9 [44311,17766].im3 #01 0-889-121 F 85 (numeric) (numeric) (numeric)
10 [45366,16647].im3 #01 0-889-121 F 85 (numeric) (numeric) (numeric)
11 [56576,16907].im3 #02 1-037-393 M 66 (numeric) (numeric) (numeric)
12 [56583,15235].im3 #02 1-037-393 M 66 (numeric) (numeric) (numeric)
13 [57130,16082].im3 #02 1-037-393 M 66 (numeric) (numeric) (numeric)
14 [57396,17896].im3 #02 1-037-393 M 66 (numeric) (numeric) (numeric)
15 [57403,16934].im3 #02 1-037-393 M 66 (numeric) (numeric) (numeric)
phenotype OS
1 (factor) (numeric)
2 (factor) (numeric)
3 (factor) (numeric)
4 (factor) (numeric)
5 (factor) (numeric)
6 (factor) (numeric)
7 (factor) (numeric)
8 (factor) (numeric)
9 (factor) (numeric)
10 (factor) (numeric)
11 (factor) (numeric)
12 (factor) (numeric)
13 (factor) (numeric)
14 (factor) (numeric)
15 (factor) (numeric)A curious reader may wonder, is it possible to create a grouped hyper data frame with ppp-hypercolumn(s), from a grouped hyper data frame? In other words, can we convert the grouped hyper data frame lung_g2 into something similar to the grouped hyper data frame s (Chapter 3)? Unfortunately, the author does not implement such functionality for package groupedHyperframe (v0.4.0, GPL-2).